NFGC - Supported Publications from 2009

1. Yoder SJ, Enkemann SA. ChIP-on-Chip Analysis methods for Affymetrix Tiling Arrays Methods. Mol Biol. 2009; 523: 367-81. PMID: 19381926 (Microarray Core).
   
   
2. McNab PM, DeMers NM, Schlauder S, Morgan M, Nasir A, Coppola D, Bui MM. Potential utility of CD5 immunohistochemical staining in the diagnosis of muscle tumors. Ann Clin Lab Sci. 2009; 39(2):108-13. IF=1.065, PMID: 19429795 (Tissue Procurement Core).
   
   
3. Valenzuela JO, Iclozan C, Hossain MS, Prlic M, Hopewell E, Bronk CC, Wang J, Celis E, Engelman RW, Blazar BR, Bevan MJ, Waller EK, Yu XZ, Beg AA. PKCtheta is required for alloreactivity and GVHD but not for immune responses toward leukemia and infection in mice. J Clin Invest. 2009 Dec; 119(12):3774-86. doi: 10.1172/JCI39692. Epub 2009 Nov 9. IF=16.559. PMID: 19907075; PMCID: PMC2786796 (Molecular Biology Core).
   
   
4. Cheng Q, Chen L, Li Z, Lane WS, Chen J. ATM activates p53 by regulating MDM2 oligomerization and E3 processivity. EMBO J. 2009 Dec 16; 28(24):3857-67. IF=8.295. PMID: 19816404 (Molecular Biology Core).
   
   
5. Yarde DN, Oliveira V, Mathews L, Wang X, Villagra A, Boulware D, Shain KH, Hazlehurst LA, Alsina M, Chen DT, Beg AA, Dalton WS. Targeting the Fanconi Anemia/BRCA Pathway Circumvents Drug Resistance in Multiple Myeloma. Cancer Res. 2009 Dec 15; 69(24):9367-75. IF=7.514. PMID: 19934314 (Biostatistics, Molecular Biology and Analytic Microscopy Cores).
   
   
6. Jorissen RN, Gibbs P, Christie M, Prakash S, Lipton L, Desai J, Kerr D, Aaltonen LA, Arango D, Kruhøffer M, Orntoft TF, Andersen CL, Gruidl M, Kamath VP, Eschrich S, Yeatman TJ, Sieber OM. Metastasis-Associated Gene Expression Changes Predict Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer. Clin Cancer Res. 2009 Dec 15; 15(24):7642-7651. IF=6.488. PMID: 19996206 (Biomedical Informatics Core).
   
   
7. Reynolds C, Obasaju C, Schell MJ, Li X, Zheng Z, Boulware D, Caton JR, Demarco LC, O'Rourke MA, Shaw Wright G, Boehm KA, Asmar L, Bromund J, Peng G, Monberg MJ, Bepler G. Randomized Phase III Trial of Gemcitabine-Based Chemotherapy With In Situ RRM1 and ERCC1 Protein Levels for Response Prediction in Non-Small-Cell Lung Cancer. J Clin Oncol. 2009 Dec 1; 27(34):5808-15. Epub 2009 Nov 2. IF=17.157. PMID: 19884554 (Biostatistics Core).
   
   
8. Remily-Wood E, Dirscherl H, Koomen JM. Acid Hydrolysis of Proteins in Matrix Assisted Laser Desorption Ionization Matrices. J Am Soc Mass Spectrom. 2009 Nov; 20(11):2106-15. Epub 2009 Jul 14. PMID: 19679491 (Proteomics Core).
   
   
9. Rajecki M, Hallstrom T, Hakkarainen T, Nokisalmi P, Hautaniemi S, Nieminen AI, Tenhunen M, Rantanen V, Desmond RM, Chen DT, Guse K, Stenman UH, Gargini R, Kapanen M, Klefstrom J, Kanerva A, Pesonen S, Ahtiainen L, Hemminki A. Mre11 inhibition by oncolytic adenovirus associates with autophagy and underlies synergy with ionizing radiation. Int J Cancer. 2009 Nov 15; 125(10):2441-2449. IF= 4.734. PMID: 19672857 (Biostatistics Core).
   
   
10. Eschrich S, Zhang H, Zhao H, Boulware D, Lee JH, Bloom G, Torres-Roca JF. Systems biology modeling of the radiation sensitivity network: A biomarker discovery platform. Int J Radiat Oncol Biol Phys. 2009 Oct 1; 75(2):497-505. PMID: 19735874 (Biomedical Informatics Core and Biostatistics Core; Torres-Roca Programmatic Research Grant).
    
    
11. Eschrich SA, Pramana J, Zhang H, Zhao H, Boulware D, Lee JH, Bloom G, Rocha-Lima C, Kelley S, Calvin DP, Yeatman TJ, Begg AC, Torres-Roca JF. A gene expression model of intrinsic tumor radiosensitivity: Prediction of response and prognosis after chemoradiation. Int J Radiat Oncol Biol Phys. 2009 Oct 1; 75(2):489-96. PMID: 19735873 (Biomedical Informatics Core and Biostatistics Core).
    
    
12. Song H, Ramus SJ, Tyrer J, Bolton KL, Gentry-Maharaj A, Wozniak E, Anton-Culver H, Chang-Claude J, Cramer DW, DiCioccio R, Dork T, Goode EL, Goodman MT, Schildkraut JM, Sellers T, Baglietto L, Beckmann MW, Beesley J, Blaakaer J, Carney ME, Chanock S, Chen Z, Cunningham JM, Dicks E, Doherty JA, Durst M, Ekici AB, Fenstermacher D, Fridley BL, Giles G, Gore ME, De Vivo I, Hillemanns P, Hogdall C, Hogdall E, Iverson ES, Jacobs IJ, Jakubowska A, Li D, Lissowska J, Lubinski J, Lurie G, McGuire V, McLaughlin J, Medrek K, Moorman PG, Moysich K, Narod S, Phelan C, Pye C, Risch H, Runnebaum IB, Severi G, Southey M, Stram DO, Thiel FC, Terry KL, Tsai YY, Tworoger SS, Van Den Berg DJ, Vierkant RA, Wang-Gohrke S, Webb PM, Wilkens LR, Wu AH, Yang H, Brewster W, Ziogas A.; Australian Cancer (Ovarian) Study; Australian Ovarian Cancer Study Group; Ovarian Cancer Association Consortium, Houlston R, Tomlinson I, Whittemore AS, Rossing MA, Ponder BA, Pearce CL, Ness RB, Menon U, Kjaer SK, Gronwald J, Garcia-Closas M, Fasching PA, Easton DF, Chenevix-Trench G, Berchuck A, Pharoah PD, Gayther SA. A Genome-Wide Association Study Identifies a Novel Ovarian Cancer Susceptibility Locus on 9p22.2. Nat Genet. 2009 Sep; 41(9):996-1000. Epub 2009 Aug 2. PMID: 19648919 (Biomedical Informatics Core).
    
    
13. Gopalappa C, Das TK, Enkemann S, Eschrich S. Removal of hybridization and scanning noise from microarrays. IEEE Trans Nanobioscience. 2009 Sep; 8(3):210-8. IF=1.341. PMID: 20051337 (Microarray Core and Biomedical Informatics Core).
    
    
14. Gao J, Zheng Z, Rawal B, Schell MJ, Bepler G, Haura EB. Mirk/Dyrk1B, a novel therapeutic target, mediates cell survival in non-small cell lung cancer cells. Cancer Biol Ther. 2009 Sep; 8(17):1671-9. Epub 2009 Sep 20. IF=2.761, PMID: 19633423 (Analytic Microscopy Core, Biostatistics Core and Mouse Models Core).
    
    
15. Coppola D, Parikh V, Boulware D, Blanck G. Substantially reduced expression of PIAS1 is associated with colon cancer development. J Cancer Res Clin Oncol. 2009 Sep; 135(9):1287-91. Epub 2009 Mar 15. IF=2.366, PMID: 19288270 (Biostatistics Core and Tissue Procurement Core).
    
    
16. Helm J, Centeno BA, Coppola D, Melis M, Lloyd M, Park JY, Chen DT, Malafa MP. Histologic characteristics enhance predictive value of American Joint Committee on Cancer staging in resectable pancreas cancer. Cancer. 2009 Sep 15; 115(18):4080-9. IF=5.238, PMID: 19626671 (Analytic Microscopy Core and Biostatistics Core).
    
    
17. Turner JG, Marchion DC, Dawson JL, Emmons MF, Hazlehurst LA, Washausen P, Sullivan DM. Human multiple myeloma cells are sensitized to topoisomerase ll inhibitors by CRM1 inhibition. Cancer Res. 2009 Sep 1; 69(17):6899-905. Epub 2009 Aug 18. IF = 7.514. PMID: 19690141 (Analytic Microscopy Core).
    
    
18. Kramer KA, Hall LO, Goldgof DB, Remsen A, Luo T. Fast support vector machines for continuous data. IEEE Trans Syst Man Cybern B Cybern. 2009 Aug; 39(4):989-1001. Epub 2009 Mar 24. PMID: 19336328  (Biomedical Informatics Core, BRCA Project).
    
    
19. Gao J, McConnell MJ, Yu B, Li J, Balko JM, Black EP, Johnson JO, Lloyd MC, Altiok S, Haura EB. MUC1 is a downstream target of STAT3 and regulates lung cancer cell survival and invasion. Int J Oncol. 2009 Aug; 35(2):337-45. IF=2.234, PMID: 19578748 (Analytic Microscopy Core and Mouse Models Core)
    
    
20. Zou JX, Rollison DE, Boulware D, Chen DT, Sloand EM, Pfannes LV, Goronzy JJ, Bai F, Painter JS, Wei S, Cosgrove D, List AF, Epling-Burnette PK. Altered naive and memory CD4+ T-cell homeostasis and immunosenescence characterize younger patients with myelodysplastic syndrome. Leukemia. 2009 Jul; 23(7):1288-96. Epub 2009 Mar 12. IF = 6.924, PMID: 19282834 (Biostatistics Core).
    
    
21. Tanvetyanon T, Qin D, Padhya T, McCaffrey J, Zhu W, Boulware D, DeConti R, Trotti A. Outcomes of postoperative concurrent chemoradiotherapy for locally advanced major salivary gland carcinoma. Arch Otolaryngol Head Neck Surg. 2009 Jul; 135(7):687-92. IF=2.026, PMID: 19620591 (Biostatistics Core).
    
    
22. Guo JP, Shu SK, He L, Lee YC, Kruk PA, Grenman S, Nicosia SV, Mor G, Schell MJ, Coppola D, Cheng JQ. Deregulation of IKBKE is associated with tumor progression, poor prognosis, and cisplatin resistance in ovarian cancer. Am J Pathol. 2009 Jul; 175 (1): 324-33. Epub 2009 Jun 4. IF=5.697. PMID: 19497997 (Tissue Procurement Core).
    
    
23. Lawrence HR, Li Z, Richard Yip ML, Sung SS, Lawrence NJ, McLaughlin ML, McManus GJ, Zaworotko MJ, Sebti SM, Chen J, Guida WC. Identification of a disruptor of the MDM2-p53 protein-protein interaction facilitated by high-throughput in silico docking. Bioorg Med Chem Lett. 2009 Jul 15; 19(14):3756-9. Epub 2009 May 3. IF=2.604, PMID: 19457663 (High Throughput Screening Core).
    
    
24. Bale S, Brooks W, Hanes JW, Mahesan AM, Guida WC, Ealick SE. Role of the sulfonium center in determining the ligand specificity of human S-adenosylmethionine decarboxylase. Biochemistry. 2009 Jul 14; 48(27):6423-30. PMID: 19527050 (High Throughput Screening Core).
    
    
25. Kabra N, Li Z, Chen L, Li B, Zhang X, Wang C, Yeatman T, Coppola D, Chen J. SirT1 is an inhibitor of proliferation and tumor formation in colon cancer. J Biol Chem. 2009 Jul 3; 284(27):18210-7. Epub 2009 May 11. IF=5.581, PMID: 19433578 (Molecular Biology Core, Analytic Microscopy Core and Chen Programmatic Research Grant).
    
    
26. Kazi A, Lawrence H, Guida WC, McLaughlin ML, Springett GM, Berndt N, Yip RM, Sebti SM. Discovery of a novel proteasome inhibitor selective for cancer cells over non-transformed cells. Cell Cycle. 2009 Jun 15; 8(12):1940-51. Epub 2009 Jun 20. IF=3.314, PMID: 19471122 (High Throughput Screening Core and Chemistry Core).
    
    
27. Boren T, Xiong Y, Hakam A, Wenham R, Apte S, Chan G, Kamath SG, Chen DT, Dressman H, Lancaster JM. MicroRNAs and their target messenger RNAs associated with ovarian cancer response to chemotherapy. Gynecol Oncol. 2009 May; (2):249-55. Epub 2009 Feb 23. PMID: 19237188 (Biostatistics Core).
    
    
28. Corzo CA, Cotter MJ, Cheng P, Cheng F, Kusmartsev S, Sotomayor E, Padhya T, McCaffrey TV, McCaffrey JC, Gabrilovich DI.  Mechanism regulating reactive oxygen species in tumor-induced myeloid-derived suppressor cells. J Immunol. 2009 May 1; 182(9):5693-701. IF=6.068, PMID: 19380816 (Analytic Microscopy Core).
    
    
29. Xu BJ, Li J, Beauchamp RD, Shyr Y, Li M, Washington MK, Yeatman TJ, Whitehead RH, Coffey RJ, Caprioli RM. Identification of early intestinal neoplasia protein biomarkers using laser capture microdissection and MALDI MS.Mol Cell Proteomics. 2009 May;8(5):936-45. Epub 2009 Jan 21.PMID: 19164278 (Vanderbilt NFGC project).
    
    
30. Marchion DC, Bicaku E, Turner JG, Schmitt ML, Morelli DR, Munster PN. HDAC2 regulates chromatin plasticity and enhances DNA vulnerability. Mol Cancer Ther. 2009 Apr; 8(4):794-801. PMID: 19372552 (Molecular Biology Core and Munster Programmatic Research Grant).
    
    
31. Kazi A, Carie A, Blaskovich MA, Bucher C, Thai V, Moulder S, Peng H, Carrico D, Pusateri E, Pledger WJ, Berndt N, Hamilton A, Sebti SM. Blockade of protein geranylgeranylation inhibits Cdk2-dependent p27Kip1 phosphorylation on Thr187 and accumulates p27Kip1 in the nucleus: implications for breast cancer therapy. Mol Cell Biol. 2009 Apr; 29(8)2254-63. Epub Feb 2009. PMID: 19204084 (Analytic Microscopy Core).
    
    
32. Glozak MA, Seto E. Acetylation/deacetylation modulates the stability of DNA replication licensing factor CDt1. J Biol Chem. 2009 Apr 24; 284(17):11446-53. Epub 2009 Mar 10. IF=5.581, PMID: 19276081 (Molecular Biology Core).
    
    
33. Tanvetyanon T, Padhya T, McCaffrey J, Zhu W, Boulware D, DeConti R, Trotti A. Prognostic Factors for Survival After Salvage Reirradiation of Head and Neck Cancer. J Clin Oncol. 2009 Apr 20; 27(12):1983-91. Epub 2009 Mar 16. IF=15.484, PMID: 19289616 (Biostatistics Core).
    
    
34. Li Z, Chen L, Kabra N, Wang C, Fang J, Chen J. Inhibition of SUV39H1 methyltransferase activity by DBC1. J Biol Chem. 2009 Apr 17; 284(16):10361-6. Epub 2009 Feb 13. IF= 5.581, PMID: 19218236 (Chen Programmatic Research Grant and Molecular Biology Core).
    
    
35. Daud AI, Dawson J, Deconti RC, Bicaku E, Marchion D, Bastien S, Hausheer FA 3rd, Lush R, Neuger A, Sullivan DM, Munster PN. Potentiation of a Topoisomerase I Inhibitor, Karenitecin, by the Histone Deacetylase Inhibitor Valproic Acid in Melanoma: Translational and Phase I/II Clinical Trial. Clin Cancer Res. 2009 Apr 1; 15(7):2479-87. Epub 2009 Mar 24. IF=6.250, PMID: 19318485 (Analytic Microscopy Core).
    
    
36. Berchuck A, Iversen ES, Luo J, Clarke JP, Horne H, Levine DA, Boyd J, Alonso  MA, Secord AA, Bernardini MQ, Barnett JC, Boren T, Murphy SK, Dressman HK, Marks JR, Lancaster JM. Microarray Analysis of Early Stage Serous Ovarian Cancers Shows Profiles Predictive of Favorable Outcome. Clin Cancer Res. 2009 Apr 1; 15(7):2448-55. Epub 2009 Mar 24. IF=6.250, PMID: 19318476 (Microarray Core).
    
    
37. Rios-Doria J, Velkova A, Dapic V, Galán-Caridad JM, Dapic V, Carvalho MA, Melendez J, Monteiro AN. Ectopic expression of histone H2AX mutants reveals a role for its post-translational modifications. Cancer Biol Ther. 2009 Mar; 8(5):422-34. Epub 2009 Mar 9. IF= 2.873. PMID: 19305155 (Analytic Microscopy and Molecular Biology Cores).
    
    
38. McCloskey DE, Bale S, Secrist JA, Tiwari A, Moss TH, Valiyaveettil J, Brooks WH, Guida WC, Pegg AE, Ealick SE. New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C(8) Substitution in Structural Analogues of S- Adenosylmethionine (dagger). J Med Chem. 2009 Mar 12;52(5):1388-407. Epub 2009 Feb 11. PMID: 19209891 (High Throughput Screening Core).
    
    
39. Reams RR, Agrawal D, Davis MB, Yoder S, Odedina FT, Kumar N, Higginbotham JM, Akinremi T, Suther S, Soliman KF. Microarray comparison of prostate tumor gene expression in African-American and Caucasian American males: a pilot project study. Infect Agent Cancer. 2009 Feb 10; 4 Suppl 1:S3. IF=NA, PMID: 19208208 (Microarray Core).
    
    
40. Permuth-Wey J, Boulware D, Valkov N, Livingston S, Nicosia S, Lee JH, Sutphen R, Schildkraut J, Narod S, Parker A, Coppola D, Sellers T, Pal T. Sampling strategies for tissue microarrays to evaluate biomarkers in ovarian cancer. Cancer Epidemiol Biomarkers Prev. 2009 Jan; 18(1):28-34. IF=5.050, PMID: 19124477 (Biostatistics Core and Tissue Procurement Core).
    
    
41. Park S, Guo J, Kim D, Cheng JQ. Identification of 24p3 as a Direct Target of Foxo3a Regulated by Interleukin-3 through the Phosphoinositide 3-Kinase/Akt Pathway. J Biol Chem. 2009 Jan 23; 284(4):2187-93. Epub 2008 Dec 4. IF=5.581, PMID: 19056725 (Molecular Biology Core).
    
    
42. Zhang Y, Zhang M, Dong H, Yong S, Li X, Olashaw N, Kruk PA, Cheng JQ, Bai W, Chen J, Nicosia SV, Zhang X. Deacetylation of cortactin by SIRT1 promotes cell migration. Oncogene. 2009 Jan 22; 28 (3):445-60. Epub 2008 Oct 13. IF=6.440, PMID: 18850005 (Chen Programmatic Research Grant, Analytic Microscopy Core and Tissue Procurement Core.
    
    
43. Dasgupta P, Rizwani W, Pillai S, Kinkade R, Kovacs M, Rastogi S, Banerjee S, Carless M, Kim E, Coppola D, Haura E, Chellappan S. Nicotine induces cell proliferation, invasion and epithelial-mesenchymal transition in a variety of human cancer cell lines. Int J Cancer. 2009 Jan 1; 124(1):36-45. IF= 4.555, PMID: 18844224 (Analytic Microscopy Core and Tissue Procurement Core).
    
    

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