GO
 
Publications

NFGC - Supported Publications from 2008

  1. Kamath V, Yeatman TJ, Eschrich SA. Toward a measure of classification complexity in gene expression signatures. Conf Proc IEEE Eng Med Biol Soc. 2008; 1:5704-7. IF=NA, PMID: 19164012 (Biomedical Informatics Core).

  2. Eschrich SA, Hoerter AM, Bloom GC, Fenstermacher DA. Tissue-specific RMA models to incrementally normalize Affymetrix GeneChip data. Conf Proc IEEE Eng Med Biol Soc. 2008; 1:2419-22. IF=NA, PMID: 19163190 (Biomedical Informatics Core).

  3. Chen DT, Schell MJ, Chen JJ, Fulp WJ, Eschrich S, Yeatman T. A predictive risk probability approach for microarray data with survival as an endpoint. J Biopharm Stat. 2008; 18(5):841-52. IF= 0.787, PMID: 18781520 (Microarray Core, Biomedical Informatics Core, Tissue Procurement Core and Yeatman Colon Cancer Project). 

  4. Draper N, Bui M, Boulware DC, Lloyd M, Chiappori AA, Pledger WJ, Coppola D. Increased cyclin D3 expression significantly correlates with p27 nuclear positivity in gastrointestinal stromal tumors. Hum Pathol. 2008 Dec; 39(12):1784-91. Epub 2008 Aug 12. IF = 3.034, PMID: 18701138 (Analytic Microscopy Core, Biostatistics Core and Tissue Procurement Core). 

  5. Jorissen RN, Lipton L, Gibbs P, Chapman M, Desai J, Jones IT, Yeatman TJ, East P, Tomlinson IP, Verspaget HW, Aaltonen LA, Kruhoffer M, Orntoft TF, Anderson CL, Sieber OM. DNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers. Clin Cancer Res. 2008 Dec 15; 14(24):8061-9. PMID: 19088021 (Yeatman Colon Cancer Project).

  6. Lu D, Liu RZ, Izumi V, Fenstermacher D, Haura EB, Koomen J, Eschrich SA. IPEP: An in silico Tool to Examine Proteolytic Peptides for Mass Spectrometry. Bioinformatics. 2008 Dec 1; 24(23):2801-2. Epub 2008 Oct 7. IF=5.039, PMID: 18842605 (Proteomics Core and Biomedical Informatics Core).

  7. Kong W, Yang H, He L, Zhao JJ, Coppola D, Dalton WS, Cheng JQ. MicroRNA-155 is regulated by the transforming growth factor beta/Smad pathway and contributes to epithelial cell plasticity by targeting RhoA. Mol Cell Biol. 2008 Nov; 28(22):6773-84. Epub 2008 Sep 15. IF=6.420, PMID: 18794355 (Tissue Procurement Core and Molecular Biology Core).

  8. Rollison DE, Pawlita M, Giuliano AR, Iannacone MR, Sondak VK, Messina JL, Cruse CW, Fenske NA, Glass LF, Kienstra M, Michael KM, Waterboer T, Gheit T, Tommasino M. Measures of cutaneous human papillomavirus infection in normal tissues as biomarkers of HPV in corresponding nonmelanoma skin cancers. Int J Cancer. 2008 Nov 15; 123(10):2337-42. Epub 2008 Aug 26. IF=4.555, PMID: 18729188 (Tissue Procurement Core).

  9. Coppola D, Khalil F, Eschrich SA, Boulware D, Yeatman T, Wang HG. Down-regulation of Bax-interacting factor-1 in colorectal adenocarcinoma. Cancer. 2008 Nov 15; 113(10):2665-70. IF=4.632, PMID: 18833585 (Microarray Core and Tissue Procurement Core).

  10. Zhao JJ, Lin J, Yang H, Kong W, He L, Ma X, Coppola D, Cheng JQ. MicroRNA-221/222 Negatively Regulates Estrogen Receptor {alpha} and Is Associated with Tamoxifen Resistance in Breast Cancer. J Biol Chem. 2008 Nov 7; 283(45):31079-86. Epub 2008 Sep 12. IF=5.581, PMID: 18790736 (Tissue Procurement Core and Molecular Biology Core).

  11. He L, Yang H, Ma Y, Pledger WJ, Cress WD, Cheng JQ. Identification of Aurora-A as a Direct Target of E2F3 during G2/M Cell Cycle Progression. J Biol Chem. 2008 Nov 7; 283(45):31012-20. Epub 2008 Sep 7. IF=5.581, PMID: 18776222 (Tissue Procurement Core and Molecular Biology Core).

  12. Grose TE, Birnbaum J. Clinical trials subject registration and randomization system (SRAR). AMIA Annu Symp Proc. 2008 Nov 6; 958. PMID: 18999171 (Research IT Core).

  13. Nair RM, Siegel EM, Chen DT, Fulp WJ, Yeatman TJ, Malafa MP, Marcet J, Shibata D. Long-term results of transanal excision after neoadjuvant chemoradiation for t2 and t3 adenocarcinomas of the rectum. J Gastrointest Surg. 2008 Oct; (10):1797-805; discussion 1805-6. PMID: 18709419 (Biostatistics Core).

  14. Liu X, Lloyd MC, Fedorenko I, Bapat P, Zhukov T, Huo Q. Enhanced imaging and accelerated photothermalysis of A549 human lung cancer cells by gold nanoparticles. Nanomedicine. 2008 Oct; Vol. 3, No. 5, 617-626. PMID: 18817466 (Analytic Microscopy Core).

  15. Koomen JM, Haura EB, Bepler G, Sutphen R, Remily-Wood ER, Benson K, Hussein M, Hazlehurst LA, Yeatman TJ, Hildreth LT, Sellers TA, Jacobsen PB, Fenstermacher DA, Dalton WS. Proteomic contributions to personalized cancer care. Mol Cell Proteomics. 2008 Oct; 7(10):1780-94. Epub 2008 Jul 29. IF = 9.425, PMID: 18664563 (Proteomics Core and Biomedical Informatics Core).

  16. Helm JF, Centeno BA, Coppola D, Druta M, Park JY, Chen DT, Hodul PJ, Kvols LK, Yeatman TJ, Carey LC, Karl RC, Malafa MP. Outcomes following resection of pancreatic adenocarcinoma: 20-year experience at a single institution. Cancer Control. 2008 Oct; (4):288-94. PMID: 18813196 (Biostatistics Core).

  17. Bewry NN, Nair RR, Emmons MF, Boulware D, Pinilla-Ibarz J, Hazlehurst LA. Stat3 contributes to resistance toward BCR-ABL inhibitors in a bone marrow microenvironment model of drug resistance. Mol Cancer Ther. 2008 Oct; 7(10):3169-75. IF=4.800, PMID: 18852120 (Biostatistics Core).

  18. Youn JI, Nagaraj S, Collazo M, Gabrilovich DI. Subsets of myeloid-derived suppressor cells in tumor-bearing mice.J Immunol. 2008 Oct 15; 181(8):5791-802. IF=6.068, PMID: 18832739  (Analytic Microscopy Core).

  19. Tanvetyanon T, Eikman EA, Sommers E, Robinson L, Boulware D, Bepler G. Computed tomography response, but not positron emission tomography scan response, predicts survival after neoadjuvant chemotherapy for resectable non-small-cell lung cancer. J Clin Oncol. 2008 Oct 1; 26(28):4610-6. IF=15.484, PMID: 18824709 (Biostatistics Core).

  20. Farma JM, Santillan AA, Melis M, Walters J, Belinc D, Chen DT, Eikman EA, Malafa M. PET/CT fusion scan enhances CT staging in patients with pancreatic neoplasms. Ann Surg Oncol. 2008 Sep; 15(9):2465-71. PMID: 18551347 (Biostatistics Core).

  21. Coppola D, Oliveri C, Sayegh Z, Boulware D, Takahashi Y, Pow-Sang J, Djeu JY, Wang HG. Bax-interacting factor-1 expression in prostate cancer. Clin Genitourin Cancer. 2008 Sep; 6(2):117-21. IF=NA, PMID: 18824435 (Biostatistics Core  and Tissue Procurement Core).

  22. Cheng P, Corzo CA, Luetteke N, Yu B, Nagaraj S, Bui MM, Ortiz M, Nacken W, Sorg C, Vogl T, Roth J, Gabrilovich DI. Inhibition of dendritic cell differentiation and accumulation of myeloid-derived suppressor cells in cancer is regulated by S100A9 protein. J Exp Med. 2008 Sep 29; 205(10):2235-49. Epub 2008 Sep 22. IF=15.612, PMID: 18809714 (Molecular Biology Core, Mouse Models Core and Tissue Procurement Core).

  23. Chinnaiyan P, Wang M, Rojiani AM, Tofilon PJ, Chakravarti A, Ang KK, Zhang HZ, Hammand E, Curran W Jr., Mehta MP. The Prognostic Value of Nestin Expression In Newly Diagnosed Glioblastoma: Report From The Radiation Therapy Oncology Group. Radiat Oncol. 2008 Sep 25; 3(1):32. PMID: 18817556 (Analytic Microscopy Core).

  24. Borysova MK, Cui Y, Snyder M, Guadagno TM. Knockdown of B-Raf impairs spindle formation and the mitotic checkpoint in human somatic cells. Cell Cycle. 2008 Sep 15; 7(18):2894-901. Epub 2008 Sep 26. IF=3.314, PMID: 18787396 (Analytic Microscopy Core).

  25. Hanashiro K, Kanai M, Geng Y, Sincinski P, Fukasawa K. Roles of cyclins A and E in the induction of centrosome amplification in p-53-compromised cells. Oncogene. 2008 Sep 11; 27(40):5288-302. Epub 2008 May 19. PMID: 18490919 (Analytic Microscopy Core).

  26. Boren T, Xiong Y, Hakam A, Wenham R, Apte S, Wei Z, Kamath S, Chen DT, Dressman H, Lancaster JM. MicroRNAs and their target messenger RNAs associated with endometrial carcinogenesis. Gynecol Oncol. 2008 Aug; 110(2):206-15. Epub 2008 May 21. IF = 2.614, PMID: 18499237 (Molecular Biology Core).

  27. Lawrence HR, Pireddu R, Chen L, Luo Y, Sung SS, Szymanski AM, Yip ML, Guida WC, Sebti SM, Wu J, Lawrence NJ. Inhibitors of Src homology-2 domain containing protein tyrosine phosphatase-2 (Shp2) based on oxindole scaffolds. J Med Chem. 2008 Aug 28; 51(16):4948-56. Epub 2008 Aug 5. IF = 4.89, PMID: 18680359 (High Throughput Screening Core).

  28. Kamath V, Goldgof D, Argilagos R, Hazlehurst L, Eschrich S. Towards a framework for analysis of biophonetic images of mouse models of cancer. Conf Proc IEEE Eng Med Biol Soc. 2008; 2008: 3079-82. Publication Date: 20-25 Aug 2008. PMID: 19163357 (Biomedical Informatics Core).

  29. Ma Y, Kurtyka CA, Boyapalle S, Sung SS, Lawrence H, Guida W, Cress WD. A small-molecule E2F inhibitor blocks growth in a melanoma culture model. Cancer Res. 2008 Aug 1; 68(15):6292-9. IF = 7.672, PMID: 18676853 (High Throughput Screening Core, Chemistry Core,  Molecular Biology Core, Tissue Procurement Core, and Analytic Microscopy Core).

  30. Ren S, Liu S, Howell P Jr., Xi Y, Enkemann SA, Ju J, Riker AI. The impact of genomics in understanding human melanoma progression and metastasis. Cancer Control. 2008 Jul; 15(3): 202-15. Review. PMID: 18596672 (Microarray Core).

  31. Li CG, Gruidl M, Eschrich S, McCarthy S, Wang HG, Alexandrow MG, Yeatman TJ. Insig2 is associated with colon tumorigenesis and inhibits Bax-mediated apoptosis. Int J Cancer. 2008 Jul 15; 123(2):273-82. IF: 4.693, PMID: 18464289 (Analytic Microscopy Core and Molecular Biology Core).

  32. Zheng Z, Li X, Schell MJ, Chen T, Boulware D, Robinson L, Sommers E, Bepler G. Thymidylate synthase in situ protein expression and survival in stage I nonsmall-cell lung cancer. Cancer. 2008 Jun 15; 112(12):2764-73. IF: 4.632, PMID: 18442042 (Biostatistics Core).

  33. Kline CL, Jackson R, Engelman R, Pledger WJ, Yeatman TJ, Irby RB. Src kinase induces tumor formation in the c-SRC C57BL/6 mouse. Int J Cancer. 2008 Jun 15; 122(12):2665-73. IF= 4.693, PMID: 18351644 

  34. Cheng GZ, Zhang W, Sun M, Wang Q, Coppola D, Mansour M, Xu L, Costanzo C, Cheng JQ, Wang LH. Twist is transcriptionally induced by activation of STAT3 and mediates STAT3 oncogenic function. J Biol Chem. 2008 May 23; 283(21):14665-73. Epub 2008 Mar 19. IF= 5.808, PMID: 18353781 (Tissue Procurement Core). 

  35. Cui Y, Guadagno TM. B-Raf (V600E) signaling deregulates the mitotic spindle checkpoint through stabilizing Mps1 levels in melanoma cells. Oncogene. 2008 May 15; 27(22):3122-33. Epub 2007 Dec 10. PMID: 18071315 (Guadagno Programmatic Research Grant,  Analytic Microscopy Core and Molecular Biology Core).

  36. Oliveira V, Romanow WJ, Geisen C, Otterness DM, Mercurio F, Wang HG, Dalton WS, Abraham RT. A protective role for the hSMG-1 kinase against tumor necrosis factor-alpha-induced apoptosis. J Biol Chem. 2008 May 9; 283(19):13174-84. Epub 2008 Mar 6. IF= 5.808, PMID: 18326048 (Molecular Biology Core). 

  37. Riker AI, Enkemann SA, Fodstad O, Liu S, Ren S, Morris C, Xi Y, Howell P, Metge B, Samant RS, Shevde LA, Li W, Eschrich S, Daud A, Ju J, Matta J. The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis. BMC Med Genomics. 2008 April 28; 1:13. PMID: 18442402 (Daud Pilot Project and Microarray Core).

  38. Elahi A, Zhang L, Yeatman TJ, Gery S, Sebti S, Shibata D. HPP1-mediated tumor suppression requires activation of STAT1 pathways. Int J Cancer. 2008 April 1; 122(7):1567-72. IF = 4.693, PMID: 18059030 (Microarray Core).

  39. Brooks WH, Daniel KG, Sung SS, Guida WC. Computational Validation of the Importance of Absolute Stereochemistry in Virtual Screening. J Chem Inf Model. 2008 March 24; 48(3):639-45. Epub 2008 Feb 12. PMID: 18266348 (Drug Discovery Core).

  40. Chiappori AA, Haura E, Rodriguez FA, Boulware D, Kapoor R, Neuger AM, Lush R, Padilla B, Burton M, Williams C, Simon G, Antonia S, Sullivan DM, Bepler G. Phase I/II study of atrasentan, an endothelin A receptor antagonist, in combination with paclitaxel and carboplatin as first-line therapy in advanced non-small cell lung cancer. Clin Cancer Res. 2008 Mar 1; 14(5): 1464-9. PMID: 18316570 (Biostatistics Core).

  41. Biçaku E, Marchion DC, Schmitt ML, Münster PN. Selective inhibition of histone deacetylase 2 silences progesterone receptor-mediated signaling. Cancer Res. 2008 March 1; 68(5):1513-9. IF= 7.656, PMID: 18316616 (Microarray Core).

  42. Cox CE, Kiluk JV, Riker AI, Cox JM, Allred N, Ramos DC, Dupont EL, Vrcel V, Diaz N, Boulware D. Significance of sentinel lymph node micrometastases in human breast cancer. J Am Coll Surg. 2008 Feb; 206(2):261-8. Epub 2007 Dec 11. PMID: 18222378 (Biostatistics Core).

  43. Yang H, Kong W, He L, Zhao JJ, O'Donnell JD, Wang J, Wenham RM, Coppola D, Kruk PA, Nicosia SV, Cheng JQ. MicroRNA expression profiling in human ovarian cancer: miR-214 induces cell survival and cisplatin resistance by targeting PTEN. Cancer Res. 2008 Jan 15; 68(2):425-33. PMID: 18199536 (Tissue Procurement Core and Molecular Biology Core).

  44. Liang Y, Liu C, Djeu JY, Zhong B, Peters T, Scharffetter-Kochanek K, Anasetti C, Yu XZ. Beta2 integrins separate graft-versus-host disease and graft-versus-leukemia effects. Blood. 2008 Jan 15; 111(2):954-62. Epub 2007 Oct 10. PMID: 17928532 (Mouse Models Core).


    Page edited 11/18/09
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